Pacote: yaha (0.1.83-2)

[ Fonte: yaha  ]

find split-read mappings on single-end queries

yaha is an open source, flexible, sensitive and accurate DNA aligner designed for single-end reads. It supports three major modes of operation:

 * The default “Optimal Query Coverage” (-OQC) mode reports the
   best set of alignments that cover the length of each query.
 * Using “Filter By Similarity” (-FBS), along with the best set of
   alignments, yaha will also output alignments that are highly similar
   to an alignment in the best set.
 * Finally, yaha can output all the alignments found for each query.

The -OQC and -FBS modes are specifically tuned to form split read mappings that can be used to accurately identify structural variation events (deletions, duplications, insertions or inversions) between the subject query and the reference genome.

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Download de yaha

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	42.6 kB	109.0 kB	[lista de arquivos]
arm64	39.4 kB	101.0 kB	[lista de arquivos]
armel	35.8 kB	92.0 kB	[lista de arquivos]
armhf	35.8 kB	72.0 kB	[lista de arquivos]
i386	45.9 kB	116.0 kB	[lista de arquivos]
mips64el	46.1 kB	129.0 kB	[lista de arquivos]
mipsel	45.0 kB	123.0 kB	[lista de arquivos]
ppc64el	48.4 kB	145.0 kB	[lista de arquivos]
s390x	41.2 kB	113.0 kB	[lista de arquivos]