Pakket: yaha (0.1.83-2)

[ Bron: yaha  ]

find split-read mappings on single-end queries

yaha is an open source, flexible, sensitive and accurate DNA aligner designed for single-end reads. It supports three major modes of operation:

 * The default “Optimal Query Coverage” (-OQC) mode reports the
   best set of alignments that cover the length of each query.
 * Using “Filter By Similarity” (-FBS), along with the best set of
   alignments, yaha will also output alignments that are highly similar
   to an alignment in the best set.
 * Finally, yaha can output all the alignments found for each query.

The -OQC and -FBS modes are specifically tuned to form split read mappings that can be used to accurately identify structural variation events (deletions, duplications, insertions or inversions) between the subject query and the reference genome.

Andere aan yaha gerelateerde pakketten

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.4) [niet arm64, ppc64el]

• dep: libgcc-s1 (>= 3.5) [armel, armhf]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 4.2) [mipsel]

yaha downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	42,6 kB	109,0 kB	[overzicht]
arm64	39,4 kB	101,0 kB	[overzicht]
armel	35,8 kB	92,0 kB	[overzicht]
armhf	35,8 kB	72,0 kB	[overzicht]
i386	45,9 kB	116,0 kB	[overzicht]
mips64el	46,1 kB	129,0 kB	[overzicht]
mipsel	45,0 kB	123,0 kB	[overzicht]
ppc64el	48,4 kB	145,0 kB	[overzicht]
s390x	41,2 kB	113,0 kB	[overzicht]