Pacote: r-bioc-grohmm (1.24.0-1)

[ Fonte: r-bioc-grohmm  ]

GRO-seq Analysis Pipeline

This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).

The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.

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Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	4,332.7 kB	4,503.0 kB	[lista de arquivos]
arm64	4,330.2 kB	4,491.0 kB	[lista de arquivos]
armel	4,330.7 kB	4,494.0 kB	[lista de arquivos]
armhf	4,328.2 kB	4,478.0 kB	[lista de arquivos]
i386	4,333.7 kB	4,502.0 kB	[lista de arquivos]
mips64el	4,330.3 kB	4,498.0 kB	[lista de arquivos]
mipsel	4,330.4 kB	4,497.0 kB	[lista de arquivos]
ppc64el	4,335.6 kB	4,511.0 kB	[lista de arquivos]
s390x	4,330.9 kB	4,499.0 kB	[lista de arquivos]