Paket: r-bioc-grohmm (1.24.0-1)

[ Quellcode: r-bioc-grohmm  ]

GRO-seq Analysis Pipeline

This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).

The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.

Andere Pakete mit Bezug zu r-bioc-grohmm

• dep: libc6 (>= 2.14) [amd64]

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [nicht amd64, arm64, ppc64el]

• dep: r-api-4.0

  virtuelles Paket, bereitgestellt durch r-base-core

• dep: r-api-bioc-3.12

  virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.3-1)

  GNU R - System für statistische Berechnungen und Grafik - Kern

• dep: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.15.6)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicranges (>= 1.31.8)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.13.12)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rtracklayer (>= 1.39.7)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.17.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-cran-mass

  GNU-R-Paket für MASS von Venables und Ripley

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-edger

  Empirische Analyse von digitalen Genexpressionsdaten mit R

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-org.hs.eg.db

  genome-wide annotation for Human

r-bioc-grohmm herunterladen

Download für alle verfügbaren Architekturen

Architektur	Paketgröße	Größe (installiert)	Dateien
amd64	4.332,7 kB	4.503,0 kB	[Liste der Dateien]
arm64	4.330,2 kB	4.491,0 kB	[Liste der Dateien]
armel	4.330,7 kB	4.494,0 kB	[Liste der Dateien]
armhf	4.328,2 kB	4.478,0 kB	[Liste der Dateien]
i386	4.333,7 kB	4.502,0 kB	[Liste der Dateien]
mips64el	4.330,3 kB	4.498,0 kB	[Liste der Dateien]
mipsel	4.330,4 kB	4.497,0 kB	[Liste der Dateien]
ppc64el	4.335,6 kB	4.511,0 kB	[Liste der Dateien]
s390x	4.330,9 kB	4.499,0 kB	[Liste der Dateien]