Pacote: libseqlib2 (1.2.0+dfsg-4)

[ Fonte: libseqlib  ]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

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Download de libseqlib2

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	158.6 kB	565.0 kB	[lista de arquivos]
arm64	144.6 kB	528.0 kB	[lista de arquivos]
armel	135.5 kB	484.0 kB	[lista de arquivos]
armhf	139.2 kB	391.0 kB	[lista de arquivos]
i386	172.1 kB	566.0 kB	[lista de arquivos]
mips64el	145.6 kB	613.0 kB	[lista de arquivos]
mipsel	146.5 kB	590.0 kB	[lista de arquivos]
ppc64el	167.1 kB	661.0 kB	[lista de arquivos]
s390x	142.8 kB	572.0 kB	[lista de arquivos]