Package: libseqlib2 (1.2.0+dfsg-4)

[ Source: libseqlib  ]

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

Other Packages Related to libseqlib2

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]

• dep: libfml0 (>= 0.1+git20190320.b499514)

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• dep: libgcc-s1 (>= 3.0) [not armel, armhf, mipsel]

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  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

• dep: libhts3 (>= 1.10)

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• dep: libjsoncpp24 (>= 1.9.4)

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• dep: libssw0 (>= 1.1)

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• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [not armel, armhf]

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

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Architecture	Package Size	Installed Size	Files
amd64	158.6 kB	565.0 kB	[list of files]
arm64	144.6 kB	528.0 kB	[list of files]
armel	135.5 kB	484.0 kB	[list of files]
armhf	139.2 kB	391.0 kB	[list of files]
i386	172.1 kB	566.0 kB	[list of files]
mips64el	145.6 kB	613.0 kB	[list of files]
mipsel	146.5 kB	590.0 kB	[list of files]
ppc64el	167.1 kB	661.0 kB	[list of files]
s390x	142.8 kB	572.0 kB	[list of files]