Paket: jellyfish (2.3.0-10)
jellyfish için bağlantılar
Debian Kaynakları:
- Hata Raporları
- Developer Information
- Debian Değişim Günlüğü
- Telif Hakkı Dosyası
- Debian Yama Takipçisi
jellyfish Kaynak Paketini İndir:
Geliştiriciler:
- Debian Med Packaging Team (QA Sayfası, Posta Arşivi)
- Shaun Jackman (QA Sayfası)
- Andreas Tille (QA Sayfası)
- Michael R. Crusoe (QA Sayfası)
Dış Kaynaklar:
- Ana Sayfa [www.cbcb.umd.edu]
Benzer paketler:
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
jellyfish ile İlgili Diğer Paketler
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [armel, armhf, i386 değil]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386]
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libjellyfish-2.0-2 (= 2.3.0-10)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
jellyfish indir
Mimari | Paket Boyutu | Kurulu Boyut | Dosyalar |
---|---|---|---|
amd64 | 771,0 kB | 2.485,0 kB | [dosya listesi] |
arm64 | 688,8 kB | 2.297,0 kB | [dosya listesi] |
armel | 639,3 kB | 1.847,0 kB | [dosya listesi] |
armhf | 664,7 kB | 1.435,0 kB | [dosya listesi] |
i386 | 750,8 kB | 2.251,0 kB | [dosya listesi] |
mips64el | 651,8 kB | 2.991,0 kB | [dosya listesi] |
ppc64el | 739,1 kB | 2.957,0 kB | [dosya listesi] |