Pakket: python3-dna-jellyfish (2.3.1-3 en anderen)
Verwijzigingen voor python3-dna-jellyfish
Debian bronnen:
Het bronpakket jellyfish downloaden:
Beheerders:
- Debian Med Packaging Team (QA-pagina, Mailarchief)
- Shaun Jackman (QA-pagina)
- Andreas Tille (QA-pagina)
- Michael R. Crusoe (QA-pagina)
- Étienne Mollier (QA-pagina)
Externe bronnen:
- Homepage [www.genome.umd.edu]
Vergelijkbare pakketten:
count k-mers in DNA sequences (Python bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Python bindings of jellyfish.
Andere aan python3-dna-jellyfish gerelateerde pakketten
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- dep: libc6 (>= 2.34)
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support bibliotheek
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- dep: libjellyfish-2.0-2 (>= 2.3.1)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.13)
- dep: python3 (>= 3.11~)
python3-dna-jellyfish downloaden
Platform | Versie | Pakketgrootte | Geïnstalleerde grootte | Bestanden |
---|---|---|---|---|
amd64 | 2.3.1-3+b4 | 65,1 kB | 326,0 kB | [overzicht] |
arm64 | 2.3.1-3+b4 | 62,5 kB | 438,0 kB | [overzicht] |
mips64el | 2.3.1-3+b4 | 60,0 kB | 452,0 kB | [overzicht] |
ppc64el | 2.3.1-3+b4 | 66,7 kB | 438,0 kB | [overzicht] |