Pakket: libjellyfish-2.0-2 (2.3.1-3 en anderen)

[ Bron: jellyfish  ]

count k-mers in DNA sequences (dynamic library of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the dynamic library the main executable of jellyfish is linked to.

Tags: Role: Shared Library

Andere aan libjellyfish-2.0-2 gerelateerde pakketten

• dep: libc6 (>= 2.38)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support bibliotheek

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

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Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	2.3.1-3+b6	65,7 kB	205,0 kB	[overzicht]
arm64	2.3.1-3+b6	60,4 kB	221,0 kB	[overzicht]
mips64el	2.3.1-3+b6	60,6 kB	233,0 kB	[overzicht]
ppc64el	2.3.1-3+b6	69,5 kB	285,0 kB	[overzicht]
riscv64	2.3.1-3+b6	64,5 kB	168,0 kB	[overzicht]