Paket: python3-dna-jellyfish (2.3.1-4)

[ Quellcode: jellyfish  ]

count k-mers in DNA sequences (Python bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Python bindings of jellyfish.

Andere Pakete mit Bezug zu python3-dna-jellyfish

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• dep: libgcc-s1 (>= 3.0) [nicht riscv64]

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• dep: libjellyfish-2.0-2 (>= 2.3.1)

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• dep: libstdc++6 (>= 13.1)

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  dep: python3 (<< 3.14)

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