Pakket: ugene (51.0+dfsg-3)

[ Bron: ugene  ]

integrated bioinformatics toolkit

Unipro UGENE is a cross-platform visual environment for DNA and protein sequence analysis. UGENE integrates the most important bioinformatics computational algorithms and provides an easy-to-use GUI for performing complex analysis of the genomic data. One of the main features of UGENE is a designer for custom bioinformatics workflows.

Andere aan ugene gerelateerde pakketten

• dep: libc6 (>= 2.38)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC support bibliotheek

• dep: libgl1

  Vendor neutral GL dispatch library -- legacy GL support

• dep: libglu1-mesa

  Mesa OpenGL utility library (GLU)

  of libglu1

  virtueel pakket geboden door libglu1-mesa

• dep: libqt5core5t64 (>= 5.15.1)

  Qt 5 core module

• dep: libqt5gui5t64 (>= 5.14.1)

  Qt 5 GUI module

  of libqt5gui5-gles (>= 5.14.1)

  Qt 5 GUI module — OpenGL ES variant

• dep: libqt5network5t64 (>= 5.15.1)

  Qt 5 network module

• dep: libqt5networkauth5 (>= 5.11.2)

  online account access for Qt apps - Library

• dep: libqt5printsupport5t64 (>= 5.0.2)

  Qt 5 print support module

• dep: libqt5script5 (>= 5.6.0~beta)

  Qt 5 script module

• dep: libqt5scripttools5 (>= 5.6.0~beta)

  Qt 5 script tools module

• dep: libqt5svg5 (>= 5.6.0~beta)

  Qt 5 SVG module

• dep: libqt5test5t64 (>= 5.6.0~beta)

  Qt 5 test module

• dep: libqt5websockets5 (>= 5.6.0)

  Qt 5 Web Sockets module

• dep: libqt5widgets5t64 (>= 5.15.1)

  Qt 5 widgets module

• dep: libqt5xml5t64 (>= 5.1.0)

  Qt 5 XML module

• dep: libsqlite3-0 (>= 3.7.11)

  SQLite 3 shared library

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: libx11-6

  X11 client-side library

• dep: libxtst6 (>= 2:1.2.5)

  X11 Testing -- Record extension library

• dep: ugene-data

  required data for UGENE - integrated bioinformatics toolkit

• dep: zlib1g (>= 1:1.2.3.3)

  compressiebibliotheek - programma's

• rec: bedtools

  suite of utilities for comparing genomic features

• rec: bowtie

  Ultrafast memory-efficient short read aligner

• rec: bowtie2

  ultrafast memory-efficient short read aligner

• rec: bwa

  Burrows-Wheeler Aligner

• rec: clark

  Pakket niet beschikbaar

• rec: clustalo

  General-purpose multiple sequence alignment program for proteins

• rec: clustalw

  global multiple nucleotide or peptide sequence alignment

• rec: cutadapt

  Clean biological sequences from high-throughput sequencing reads

• rec: default-jre-headless

  Standard Java or Java compatible Runtime (headless)

• rec: fastqc

  quality control for high throughput sequence data

• rec: hisat2

  graph-based alignment of short nucleotide reads to many genomes

• rec: hmmer

  profile hidden Markov models for protein sequence analysis

• rec: hmmer2

  profile hidden Markov models for protein sequence analysis

• rec: kalign

  Global and progressive multiple sequence alignment

• rec: kraken

  assigning taxonomic labels to short DNA sequences

• rec: macs

  Model-based Analysis of ChIP-Seq on short reads sequencers

• rec: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• rec: metaphlan2

  virtueel pakket geboden door metaphlan

• rec: mrbayes

  Bayesian Inference of Phylogeny

• rec: muscle

  Multiple alignment program of protein sequences

• rec: ncbi-blast+

  next generation suite of BLAST sequence search tools

• rec: phyml

  Phylogenetic estimation using Maximum Likelihood

• rec: primer3

  tool to design flanking oligo nucleotides for DNA amplification

• rec: r-base

  GNU R statistical computation and graphics system

• rec: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• rec: spades

  genome assembler for single-cell and isolates data sets

• rec: t-coffee

  Multiple Sequence Alignment

• rec: trimmomatic

  flexible read trimming tool for Illumina NGS data

• rec: vcftools

  Collection of tools to work with VCF files

• rec: wevote

  Pakket niet beschikbaar

• sug: cufflinks

  Transcript assembly, differential expression and regulation for RNA-Seq

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mips64el	18.283,7 kB	106.145,0 kB	[overzicht]