Pakket: srst2 (0.2.0-13) [debports]

Verwijzigingen voor srst2

Debian bronnen:

Probleemrapporten

Het bronpakket downloaden:

Niet gevonden

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Externe bronnen:

Homepage [katholt.github.io]

Vergelijkbare pakketten:

Short Read Sequence Typing for Bacterial Pathogens

This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

Andere aan srst2 gerelateerde pakketten

depends

recommends

suggests

enhances

dep: bowtie2

ultrafast memory-efficient short read aligner
dep: cd-hit

suite of programs designed to quickly group sequences
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biopython

Python3 library for bioinformatics
dep: python3-scipy

scientific tools for Python 3
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats

rec: python3-rpy2

Python3 interface to the GNU R language and environment (version 2)

srst2 downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
sparc64 (unofficial port)	59,9 kB	265,0 kB	[overzicht]