Pakket: mosdepth (0.3.10+ds-1 en anderen)

Verwijzigingen voor mosdepth

Debian bronnen:

Het bronpakket mosdepth downloaden:

Beheerders:

Externe bronnen:

Homepage [github.com]

Vergelijkbare pakketten:

BAM/CRAM depth calculation biological sequencing

Many small reads are produced by high-throughput "next generation" sequencing technologies. The final sequence is derived from how these reads are overlapping towards a consensus. The more reads are covering/confirming parts of a nucleotide seq, the higher the confidence is. Too many reads would be indicative of e.g. repeats in the genome.

mosdepth can output:

 *  per-base depth about 2x as fast samtools depth--about 25 minutes
    of CPU time for a 30X genome.
 *  mean per-window depth given a window size--as would be used for
    CNV calling.
 *  the mean per-region given a BED file of regions.
 *  a distribution of proportion of bases covered at or above a given
    threshold for each chromosome and genome-wide.
 *  quantized output that merges adjacent bases as long as they fall
    in the same coverage bins e.g. (10-20)
 *  threshold output to indicate how many bases in each region are
    covered at the given thresholds.

when appropriate, the output files are bgzipped and indexed for ease of use.

Andere aan mosdepth gerelateerde pakketten

depends

recommends

suggests

enhances

dep: libc6 (>= 2.33) [sparc64]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb

dep: libc6 (>= 2.34) [niet sparc64]
dep: libhts-dev [niet sparc64]

development files for the HTSlib

mosdepth downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	0.3.10+ds-1	170,2 kB	597,0 kB	[overzicht]
arm64	0.3.10+ds-1	164,5 kB	597,0 kB	[overzicht]
armel	0.3.10+ds-1	156,1 kB	557,0 kB	[overzicht]
armhf	0.3.10+ds-1	159,2 kB	433,0 kB	[overzicht]
i386	0.3.10+ds-1	182,6 kB	632,0 kB	[overzicht]
mips64el	0.3.10+ds-1	154,8 kB	660,0 kB	[overzicht]
ppc64 (unofficial port)	0.3.10+ds-1	177,7 kB	790,0 kB	[overzicht]
ppc64el	0.3.10+ds-1	179,6 kB	725,0 kB	[overzicht]
riscv64	0.3.10+ds-1	170,3 kB	501,0 kB	[overzicht]
sparc64 (unofficial port)	0.3.3+ds-1	134,0 kB	543,0 kB	[overzicht]