Pakket: libwfa2-0 (2.3.3-4 en anderen)

[ Bron: libwfa2  ]

exact gap-affine algorithm (shared library)

The wavefront alignment (WFA) algorithm is an exact gap-affine algorithm that takes advantage of homologous regions between the sequences to accelerate the alignment process. Unlike to traditional dynamic programming algorithms that run in quadratic time, the WFA runs in time O(ns+s^2), proportional to the sequence length n and the alignment score s, using O(s^2) memory (or O(s) using the ultralow/BiWFA mode). Moreover, the WFA algorithm exhibits simple computational patterns that the modern compilers can automatically vectorize for different architectures without adapting the code. To intuitively illustrate why the WFA algorithm is so interesting, look at the following figure. The left panel shows the cells computed by a classical dynamic programming based algorithm (like Smith-Waterman or Needleman Wunsch). In contrast, the right panel shows the cells computed by the WFA algorithm to obtain the same result (i.e., the optimal alignment).

Tags: Role: Shared Library

Andere aan libwfa2-0 gerelateerde pakketten

• dep: libc6 (>= 2.17) [niet alpha, ia64, loong64, riscv64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.40) [loong64]

• dep: libc6.1 (>= 2.17) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [niet ia64]

  GCC support bibliotheek

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

libwfa2-0 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	2.3.3-4+b2	61,9 kB	280,0 kB	[overzicht]
amd64	2.3.3-4+b2	59,4 kB	185,0 kB	[overzicht]
arm64	2.3.3-4+b2	53,8 kB	277,0 kB	[overzicht]
ia64 (unofficial port)	2.3.3-4	73,7 kB	301,0 kB	[overzicht]
loong64 (unofficial port)	2.3.3-4+b2	58,8 kB	276,0 kB	[overzicht]
mips64el	2.3.3-4+b2	55,1 kB	293,0 kB	[overzicht]
ppc64 (unofficial port)	2.3.3-4+b2	69,0 kB	341,0 kB	[overzicht]
ppc64el	2.3.3-4+b2	65,8 kB	277,0 kB	[overzicht]
riscv64	2.3.3-4+b2	59,2 kB	161,0 kB	[overzicht]
s390x	2.3.3-4+b2	62,0 kB	201,0 kB	[overzicht]
sparc64 (unofficial port)	2.3.3-4+b2	48,7 kB	2.080,0 kB	[overzicht]