Pakket: stringtie (2.2.1+ds-2)

[ Bron: stringtie  ]

assemble short RNAseq reads to transcripts

The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.

StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.

Andere aan stringtie gerelateerde pakketten

• dep: libc6 (>= 2.33)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.4) [amd64, i386, mips64el, mipsel]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libhts3 (>= 1.13)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 4.1.1)

  GNU Standard C++ Library v3

• rec: stringtie-examples

  Pakket niet beschikbaar

• sug: cufflinks

  Transcript assembly, differential expression and regulation for RNA-Seq

stringtie downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	387,2 kB	997,0 kB	[overzicht]
arm64	337,6 kB	937,0 kB	[overzicht]
armel	334,3 kB	952,0 kB	[overzicht]
armhf	342,1 kB	664,0 kB	[overzicht]
i386	418,0 kB	1.244,0 kB	[overzicht]
mips64el	348,1 kB	1.159,0 kB	[overzicht]
mipsel	349,4 kB	1.176,0 kB	[overzicht]
ppc64el	401,3 kB	1.245,0 kB	[overzicht]
s390x	350,1 kB	1.053,0 kB	[overzicht]