Pakket: sibsim4 (0.20-5)

[ Bron: sibsim4  ]

align expressed RNA sequences on a DNA template

The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals:

 * speed improvement;
 * allow large, chromosome scale, DNA sequences to be used;
 * provide more detailed output about splice types;
 * provide more detailed output about polyA sites;
 * misc code cleanups and fixes.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::TODO, use::comparing, Searching, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Need an extra tag

Andere aan sibsim4 gerelateerde pakketten

• dep: libc6 (>= 2.14) [amd64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [niet amd64, arm64, ppc64el]

sibsim4 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	29,7 kB	73,0 kB	[overzicht]
arm64	28,1 kB	73,0 kB	[overzicht]
armel	27,5 kB	72,0 kB	[overzicht]
armhf	26,2 kB	56,0 kB	[overzicht]
i386	30,8 kB	80,0 kB	[overzicht]
mips64el	29,3 kB	79,0 kB	[overzicht]
mipsel	28,4 kB	78,0 kB	[overzicht]
ppc64el	31,9 kB	85,0 kB	[overzicht]
s390x	30,5 kB	77,0 kB	[overzicht]