Pakket: r-bioc-dnacopy (1.72.3-1)

[ Bron: r-bioc-dnacopy  ]

R package: DNA copy number data analysis

Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.

This package is for analyzing array DNA copy number data, which is usually (but not always) called array Comparative Genomic Hybridization (array CGH) data It implements a methodology for finding change-points in these data which are points after which the (log) test over reference ratios have changed location. This model is that the change-points correspond to positions where the underlying DNA copy number has changed. Therefore, change-points can be used to identify regions of gained and lost copy number. Also provided is a function for making relevant plots of these data.

Andere aan r-bioc-dnacopy gerelateerde pakketten

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgfortran5 (>= 10)

  Runtime library for GNU Fortran applications

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.16

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-2)

  GNU R core of statistical computation and graphics system

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Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	368,5 kB	521,0 kB	[overzicht]
arm64	365,9 kB	533,0 kB	[overzicht]
armel	370,0 kB	524,0 kB	[overzicht]
armhf	365,0 kB	496,0 kB	[overzicht]
i386	368,8 kB	516,0 kB	[overzicht]
mips64el	367,4 kB	534,0 kB	[overzicht]
mipsel	368,1 kB	533,0 kB	[overzicht]
ppc64el	370,8 kB	533,0 kB	[overzicht]
s390x	367,0 kB	513,0 kB	[overzicht]