Package: libfreecontact0t64 (1.0.21-14)

[ Source: freecontact  ]

fast protein contact predictor library

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the shared library implementing freecontact.

Other Packages Related to libfreecontact0t64

• dep: libblas3

  기본 선형 대수 참조 구현, 공유 라이브러리

  or libblas.so.3

  virtual package provided by libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.34)

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• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  GCC 기능 지원 라이브러리

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgfortran5 (>= 8)

  GNU 포트란 어플리케이션 런타임 라이브러리

• dep: libgomp1 (>= 6)

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• dep: liblapack3

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  or liblapack.so.3

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• dep: libstdc++6 (>= 13.1)

  GNU 표준 C++ 라이브러리 v3

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