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[ Source: htslib  ]

Package: libhts3t64 (1.21+ds-1 and others)

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C library for high-throughput sequencing data formats

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

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Download libhts3t64

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1.21+ds-1 446.4 kB1,406.0 kB [list of files]
amd64 1.21+ds-1 451.7 kB1,120.0 kB [list of files]
arm64 1.21+ds-1 416.1 kB1,272.0 kB [list of files]
armel 1.21+ds-1 394.1 kB1,203.0 kB [list of files]
armhf 1.21+ds-1 398.1 kB947.0 kB [list of files]
hppa (unofficial port) 1.21+ds-1 459.3 kB1,192.0 kB [list of files]
i386 1.21+ds-1 494.2 kB1,227.0 kB [list of files]
ia64 (unofficial port) 1.19+ds-1.1+b1 550.8 kB2,073.0 kB [list of files]
m68k (unofficial port) 1.21+ds-1 395.8 kB979.0 kB [list of files]
mips64el 1.21+ds-1 411.4 kB1,383.0 kB [list of files]
ppc64 (unofficial port) 1.21+ds-1 476.5 kB1,591.0 kB [list of files]
ppc64el 1.21+ds-1 488.9 kB1,591.0 kB [list of files]
riscv64 1.21+ds-1 458.7 kB932.0 kB [list of files]
s390x 1.21+ds-1 451.5 kB1,179.0 kB [list of files]
sh4 (unofficial port) 1.21+ds-1 502.0 kB1,142.0 kB [list of files]
sparc64 (unofficial port) 1.21+ds-1 391.9 kB5,264.0 kB [list of files]
x32 (unofficial port) 1.21+ds-1 454.7 kB1,079.0 kB [list of files]