Package: pizzly (0.37.3+ds-10)

[ Source: pizzly  ]

Experimental package

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

Other Packages Related to pizzly

• dep: kallisto

  near-optimal RNA-Seq quantification

• dep: libc6 (>= 2.38) [not alpha]

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6-udeb

• dep: libc6.1 (>= 2.38) [alpha]

  GNU C 라이브러리: 공유 라이브러리
  also a virtual package provided by libc6.1-udeb

• dep: libgcc-s1 (>= 3.0) [not alpha, riscv64, sparc64]

  GCC 기능 지원 라이브러리

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

  dep: libgcc-s1 (>= 4.3) [sparc64]

• dep: libstdc++6 (>= 13.1)

  GNU 표준 C++ 라이브러리 v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  압축 라이브러리 - 런타임

• rec: python3-h5py

  general-purpose Python interface to hdf5

Download pizzly

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	270.6 kB	995.0 kB	[list of files]
amd64	306.3 kB	936.0 kB	[list of files]
arm64	265.5 kB	928.0 kB	[list of files]
mips64el	259.3 kB	1,025.0 kB	[list of files]
ppc64 (unofficial port)	295.7 kB	1,120.0 kB	[list of files]
ppc64el	298.3 kB	1,056.0 kB	[list of files]
riscv64	293.0 kB	728.0 kB	[list of files]
s390x	299.1 kB	952.0 kB	[list of files]
sparc64 (unofficial port)	240.1 kB	1,062.0 kB	[list of files]
x32 (unofficial port)	306.3 kB	883.0 kB	[list of files]