Package: fasttree (2.1.11-2)
Links for fasttree
Debian Resources:
Download Source Package fasttree:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Steffen Moeller (QA Page)
- Thorsten Alteholz (QA Page)
- Andreas Tille (QA Page)
- Roland Fehrenbacher (QA Page)
External Resources:
- Homepage [www.microbesonline.org]
Similar packages:
phylogenetic trees from alignments of nucleotide or protein sequences
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.
FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").
This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).
Other Packages Related to fasttree
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- dep: libc6 (>= 2.29)
- GNU C 라이브러리: 공유 라이브러리
also a virtual package provided by libc6-udeb
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) 지원 라이브러리
Download fasttree
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
amd64 | 176.6 kB | 483.0 kB | [list of files] |
arm64 | 167.5 kB | 465.0 kB | [list of files] |
armel | 172.2 kB | 509.0 kB | [list of files] |
armhf | 164.9 kB | 385.0 kB | [list of files] |
i386 | 178.9 kB | 517.0 kB | [list of files] |
mips64el | 171.5 kB | 527.0 kB | [list of files] |
mipsel | 171.8 kB | 515.0 kB | [list of files] |
ppc64el | 181.9 kB | 635.0 kB | [list of files] |
s390x | 166.4 kB | 493.0 kB | [list of files] |