パッケージ: r-cran-alakazam (1.3.0-1)

[ ソース: r-cran-alakazam  ]

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

その他の r-cran-alakazam 関連パッケージ

• dep: libc6 (>= 2.14)

  GNU C ライブラリ: 共有ライブラリ
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• dep: libgcc-s1 (>= 3.0)

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• dep: libstdc++6 (>= 13.1)

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• dep: r-api-4.0

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• dep: r-bioc-biostrings (>= 2.56.0)

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• dep: r-bioc-genomicalignments (>= 1.24.0)

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• dep: r-bioc-iranges (>= 2.22.2)

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• dep: r-cran-airr (>= 1.4.1)

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• dep: r-cran-ape

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• dep: r-cran-dplyr (>= 1.0)

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• dep: r-cran-ggplot2 (>= 3.4.0)

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• sug: r-cran-knitr

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• sug: r-cran-testthat

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