パッケージ: r-cran-alakazam (0.2.11-1)

[ ソース: r-cran-alakazam  ]

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

その他の r-cran-alakazam 関連パッケージ

• dep: libc6 (>= 2.14)

  GNU C ライブラリ: 共有ライブラリ
  以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb

• dep: libgcc1 (>= 1:3.0)

  GCC 共有ライブラリ

• dep: libstdc++6 (>= 5.2)

  GNU 標準 C++ ライブラリ v3

• dep: r-api-3.5

  以下のパッケージによって提供される仮想パッケージです: r-base-core

• dep: r-base-core (>= 3.5.1-1)

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• dep: r-cran-dplyr (>= 0.5.0)

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• dep: r-cran-ggplot2 (>= 2.0.0)

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• dep: r-cran-igraph (>= 1.0.0)

  GNU R network analysis and visualization

• dep: r-cran-lazyeval

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• dep: r-cran-progress

  GNU R terminal progress bars

• dep: r-cran-rcpp (>= 0.12.12)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-readr

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• dep: r-cran-scales

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• dep: r-cran-seqinr

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• dep: r-cran-stringi

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• dep: r-cran-tidyr

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• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

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• sug: r-cran-testthat

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アーキテクチャ	パッケージサイズ	インストールサイズ	ファイル
amd64	1,617.1 kB	1,943.0 kB	[ファイル一覧]