パッケージ: libfreecontact-dev (1.0.21-14) [debports]
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fast protein contact predictor library - development files
FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.
This package contains files necessary for developing applications with libfreecontact.
libfreecontact-dev を提供するパッケージ
- libfreecontact-dev
- fast protein contact predictor library - development files
その他の libfreecontact-dev 関連パッケージ
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- dep: libfreecontact0t64 (= 1.0.21-14)
- fast protein contact predictor library
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- sug: libfreecontact-doc
- documentation for libfreecontact