[ bullseye ]
[ sid ]
[ ソース: vg ]
パッケージ: vg (1.30.0+ds-1 など)
tools for working with genome variation graphs
variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods
Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of:
- nodes, which are labeled by sequences and ids - edges, which connect two nodes via either of their respective ends - paths, describe genomes, sequence alignments, and annotations (such as gene models and transcripts) as walks through nodes connected by edges
This model is similar to a number of sequence graphs that have been used in assembly and multiple sequence alignment. Paths provide coordinate systems relative to genomes encoded in the graph, allowing stable mappings to be produced even if the structure of the graph is changed.
その他の vg 関連パッケージ
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- dep: libatomic1 (>= 4.8)
- __atomic ビルトイン関数を提供するサポートライブラリ
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- dep: libboost-program-options1.74.0 (>= 1.74.0)
- C++ 用プログラムオプションライブラリ
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- dep: libc6 (>= 2.29)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libcairo2 (>= 1.2.4)
- Cairo 二次元ベクトルグラフィックライブラリ
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- dep: libdivsufsort3 (>= 2.0.1)
- fast suffix array construction
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- dep: libdw1 (>= 0.126) [amd64]
- DWARF デバッグ情報へアクセスする手段を提供するライブラリ
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- dep: libfastahack0 (>= 0.0+git20160702.bbc645f)
- library for indexing and sequence extraction from FASTA files (lib)
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- dep: libgcc-s1 (>= 4.2)
- GCC 共有ライブラリ
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) サポートライブラリ
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libjansson4 (>= 2.2)
- JSON データのエンコード、デコード、操作用 C ライブラリ
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- dep: libjemalloc2 (>= 5.0.0)
- general-purpose scalable concurrent malloc(3) implementation
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- dep: libraptor2-0 (>= 2.0.14)
- Raptor 2 RDF 構文ライブラリ
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- dep: libssw0 (>= 1.1)
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
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- dep: libstdc++6 (>= 9)
- GNU 標準 C++ ライブラリ v3
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- dep: libtabixpp0 (>= 1.0.0)
- C++ wrapper to tabix indexer
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- dep: libvcflib1 (>= 1.0.2+dfsg)
- C++ library for parsing and manipulating VCF files
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- dep: zlib1g (>= 1:1.1.4)
- 圧縮ライブラリ - ランタイム