パッケージ: rna-star (2.7.8a+dfsg-2)
rna-star に関するリンク
Debian の資源:
rna-star ソースパッケージをダウンロード:
- [rna-star_2.7.8a+dfsg-2.dsc]
- [rna-star_2.7.8a+dfsg.orig.tar.xz]
- [rna-star_2.7.8a+dfsg-2.debian.tar.xz]
メンテナ:
- Debian Med Packaging Team (QA ページ, メールアーカイブ)
- Steffen Moeller (QA ページ)
- Andreas Tille (QA ページ)
- Sascha Steinbiss (QA ページ)
- Nilesh Patra (QA ページ)
外部の資源:
- ホームページ [github.com]
類似のパッケージ:
ultrafast universal RNA-seq aligner
Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.
その他の rna-star 関連パッケージ
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- dep: libc6 (>= 2.29)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [amd64]
- GCC 共有ライブラリ
- dep: libgcc-s1 (>= 4.2) [amd64 以外]
-
- dep: libgomp1 (>= 6) [amd64 以外]
- GCC OpenMP (GOMP) サポートライブラリ
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 9)
- GNU 標準 C++ ライブラリ v3