Пакет: rna-star (2.7.8a+dfsg-2)

[ Източник: rna-star  ]

ultrafast universal RNA-seq aligner

Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.

Етикети: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Role: Program, Purpose: use::analysing, works-with::biological-sequence

Други пакети, свързани с rna-star

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgcc-s1 (>= 3.3.1) [amd64]

  GCC support library

  dep: libgcc-s1 (>= 4.2) [не amd64]

• dep: libgomp1 (>= 6) [не amd64]

  GCC OpenMP (GOMP) support library

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	1 248,6 кБ	21 606,0 кБ	[списък на файловете]
arm64	630,5 кБ	2 300,0 кБ	[списък на файловете]
mips64el	617,4 кБ	2 780,0 кБ	[списък на файловете]
ppc64el	670,2 кБ	2 812,0 кБ	[списък на файловете]