Package: skesa (2.4.0-1)

[ Source: skesa  ]

strategic Kmer extension for scrupulous assemblies

SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or different compute resources. SKESA has been used for assembling over 272,000 read sets in the Sequence Read Archive at NCBI and for real-time pathogen detection.

Other Packages Related to skesa

• dep: libc6 (>= 2.29)

  Libreria C GNU: librerie condivise
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64]

  libreria di supporto a GCC

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libncbi-vdb2 (>= 2.10.6+dfsg)

  libreria per usare dati in archivi di letture di sequenze INSDC

• dep: libstdc++6 (>= 7)

  libreria GNU Standard C++, versione 3

• dep: zlib1g (>= 1:1.1.4)

  libreria di compressione - runtime

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Architecture	Package Size	Installed Size	Files
amd64	688.1 kB	2,662.0 kB	[list of files]
i386	745.7 kB	3,100.0 kB	[list of files]