Package: sepp (4.3.10+dfsg-5)

[ Source: sepp  ]

phylogeny with ensembles of Hidden Markov Models

The tools SEPP and TIPP implementing these methods use ensembles of Hidden Markov Models (HMMs) in different ways, each focusing on a different problem.

SEPP stands for "SATe-enabled Phylogenetic Placement", and addresses the problem of phylogenetic placement of short reads into reference alignments and trees.

TIPP stands for "Taxonomic Identification and Phylogenetic Profiling", and addresses the problem of taxonomic identification and abundance profiling of metagenomic data.

Other Packages Related to sepp

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• dep: libcommons-collections3-java

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• dep: libcommons-lang-java

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• dep: libcommons-logging-java

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• dep: libgoogle-gson-java

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• dep: libjenkins-json-java

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• dep: libjson-java

  library for transforming Java objects and XML to JSON and back again

• dep: ncbi-blast+

  suite di prossima generazione degli strumenti di ricerca di sequenze BLAST

• dep: pplacer

  phylogenetic placement and downstream analysis

• dep: python3

  linguaggio interattivo di alto livello orientato agli oggetti (versione python3 predefinita)

• dep: python3-dendropy

  libreria di calcolo filogenetico DendroPy (Python 3)

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Architecture	Package Size	Installed Size	Files
amd64	179.6 kB	551.0 kB	[list of files]