[ bullseye ]
[ sid ]
[ 源代码： sepp ]
软件包：sepp（4.3.10+dfsg-5）
phylogeny with ensembles of Hidden Markov Models
The tools SEPP and TIPP implementing these methods use ensembles of Hidden Markov Models (HMMs) in different ways, each focusing on a different problem.
SEPP stands for "SATe-enabled Phylogenetic Placement", and addresses the problem of phylogenetic placement of short reads into reference alignments and trees.
TIPP stands for "Taxonomic Identification and Phylogenetic Profiling", and addresses the problem of taxonomic identification and abundance profiling of metagenomic data.
其他与 sepp 有关的软件包
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- dep: hmmer
- profile hidden Markov models for protein sequence analysis
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- dep: libcommons-beanutils-java
- Apache Commons BeanUtils - Utility for manipulating Java beans
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- dep: libcommons-collections3-java
- Apache Commons Collections - Extended Collections API for Java
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- dep: libcommons-lang-java
- Commons Lang - an extension of the java.lang package
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- dep: libcommons-logging-java
- common wrapper interface for several logging APIs
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- dep: libgoogle-gson-java
- Converts Java objects into their JSON representation
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- dep: libjenkins-json-java
- Library for transforming Java objects between XML and JSON
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- dep: libjson-java
- library for transforming Java objects and XML to JSON and back again
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: pplacer
- phylogenetic placement and downstream analysis
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- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
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- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)