Package: python3-freecontact (1.1-5 and others)

[ Source: python-freecontact  ]

fast protein contact predictor - binding for Python3

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the Python3 binding.

Other Packages Related to python3-freecontact

• dep: libboost-python1.74.0 (>= 1.74.0)

  libreria Boost.Python

• dep: libboost-python1.74.0-py39

  virtual package provided by libboost-python1.74.0

• dep: libc6 (>= 2.14) [amd64]

  Libreria C GNU: librerie condivise
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]

• dep: libfreecontact0v5 (>= 1.0.21)

  fast protein contact predictor library

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  libreria di supporto a GCC

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2)

  libreria GNU Standard C++, versione 3

• dep: python3 (<< 3.10)

  linguaggio interattivo di alto livello orientato agli oggetti (versione python3 predefinita)

  dep: python3 (>= 3.9~)

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Architecture	Version	Package Size	Installed Size	Files
amd64	1.1-5+b7	71.8 kB	252.0 kB	[list of files]
arm64	1.1-5+b7	69.5 kB	244.0 kB	[list of files]
armel	1.1-5+b7	67.8 kB	235.0 kB	[list of files]
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i386	1.1-5+b7	73.5 kB	247.0 kB	[list of files]
mips64el	1.1-5+b7	69.7 kB	266.0 kB	[list of files]
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ppc64el	1.1-5+b7	73.1 kB	272.0 kB	[list of files]
s390x	1.1-5+b7	69.5 kB	252.0 kB	[list of files]