Paquet : r-bioc-ggbio (1.52.0-1)

[ Paquet source : r-bioc-ggbio  ]

Visualization tools for genomic data

The ggbio package extends and specializes the grammar of graphics for biological data. The graphics are designed to answer common scientific questions, in particular those often asked of high throughput genomics data. All core Bioconductor data structures are supported, where appropriate. The package supports detailed views of particular genomic regions, as well as genome-wide overviews. Supported overviews include ideograms and grand linear views. High-level plots include sequence fragment length, edge-linked interval to data view, mismatch pileup, and several splicing summaries.

Autres paquets associés à r-bioc-ggbio

• dep: r-api-4.0

  paquet virtuel fourni par r-base-core

• dep: r-api-bioc-3.19

  paquet virtuel fourni par r-bioc-biocgenerics

• dep: r-bioc-annotationdbi (>= 1.66.0)

  GNU R Annotation Database Interface pour BioConductor

• dep: r-bioc-annotationfilter (>= 1.28.0)

  fonctions pour le filtrage des ressources d'annotation de BioConductor

• dep: r-bioc-biobase (>= 2.64.0)

  fonctions de base pour Bioconductor

• dep: r-bioc-biocgenerics (>= 0.50.0)

  generic functions for Bioconductor

• dep: r-bioc-biostrings (>= 2.72.1)

  GNU R string objects representing biological sequences

• dep: r-bioc-biovizbase (>= 1.52.0)

  GNU R basic graphic utilities for visualization of genomic data

• dep: r-bioc-bsgenome (>= 1.72.0)

  infrastructure de BioConductor pour les paquets de données de génome basés sur Biostrings

• dep: r-bioc-ensembldb (>= 2.28.0)

  GNU R utilities to create and use an Ensembl based annotation database

• dep: r-bioc-genomeinfodb (>= 1.40.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.40.0)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicfeatures (>= 1.56.0)

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges (>= 1.56.1)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.38.1)

  conteneurs de bas niveau de GNU R de stockage de plages d’entiers

• dep: r-bioc-organismdbi (>= 1.46.0)

  smooth interfacing of different database packages

• dep: r-bioc-rsamtools (>= 2.20.0)

  importation de fichiers BAM, BCF et tabix pour GNU R

• dep: r-bioc-rtracklayer (>= 1.64.0)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.42.1)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment (>= 1.34.0)

  BioConductor assay container

• dep: r-bioc-variantannotation (>= 1.50.0)

  BioConductor annotation of genetic variants

• dep: r-cran-ggally

  GNU R extension to r-cran-ggplot2

• dep: r-cran-ggplot2 (>= 1.0.0)

  implementation of the Grammar of Graphics

• dep: r-cran-gridextra

  GNU R package with extensions for the grid package

• dep: r-cran-gtable

  Arrange grobs in tables

• dep: r-cran-hmisc

  fonctions diverses de GNU R créées par Franck Harell

• dep: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-scales

  Scale functions for visualization

• sug: r-bioc-biocstyle (>= 2.32.1)

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-testthat

  GNU R testsuite

• sug: r-cran-tinytex

  GNU R helper to compile LaTeX documents

Télécharger r-bioc-ggbio

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
all	2 879,7 ko	4 237,0 ko	[liste des fichiers]