Paquet : r-bioc-structuralvariantannotation (1.13.0+ds-1)

[ Paquet source : r-bioc-structuralvariantannotation  ]

Variant annotations for structural variants

StructuralVariantAnnotation contains useful helper functions for dealing with structural variants in VCF format. The packages contains functions for parsing VCFs from a number of popular callers as well as functions for dealing with breakpoints involving two separate genomic loci encoded as GRanges objects.

Autres paquets associés à r-bioc-structuralvariantannotation

• dep: r-api-4.0

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• dep: r-base-core (>= 4.2.2.20221110-1)

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• dep: r-bioc-biocgenerics

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• dep: r-bioc-biostrings

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• dep: r-bioc-genomeinfodb

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• dep: r-bioc-genomicfeatures

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• dep: r-bioc-genomicranges

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• dep: r-bioc-iranges

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• dep: r-bioc-rtracklayer

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• dep: r-bioc-s4vectors

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• dep: r-bioc-summarizedexperiment

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• dep: r-bioc-variantannotation

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• dep: r-cran-assertthat

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• dep: r-cran-dplyr

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• dep: r-cran-rlang

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• dep: r-cran-stringr

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• sug: r-bioc-biovizbase

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• sug: r-bioc-ggbio

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• sug: r-cran-devtools

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• sug: r-cran-ggplot2

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• sug: r-cran-knitr

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• sug: r-cran-rmarkdown

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• sug: r-cran-roxygen2

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• sug: r-cran-testthat (>= 2.1.0)

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• sug: r-cran-tidyverse

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