Paketti: progressivemauve (1.2.0+4713+dfsg-5 ja muut)

[ Source: progressivemauve  ]

multiple genome alignment algorithms

The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.

Muut pakettiin progressivemauve liittyvät paketit

• dep: libboost-filesystem1.83.0 (>= 1.83.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  Boost.Iostreams -kirjasto

• dep: libboost-program-options1.83.0 (>= 1.83.0)

  program options library for C++

• dep: libboost-system1.83.0 (>= 1.83.0) [sparc64]

  Operating system (e.g. diagnostics support) library

• dep: libc6 (>= 2.34) [ei alpha, arm64, ia64, sh4, x32]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.38) [arm64, x32]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.4) [alpha, amd64, mips64el, ppc64, riscv64, sparc64, x32]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC:n apukirjasto

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC:n apukirjasto

• dep: libgenome0 (>= 1.3.11+svn20110227.4616)

  toolkit for developing bioinformatic related software

• dep: libmems1 (>= 1.6.0+4725) [alpha, ia64, ppc64, sparc64]

  library to support DNA string matching and comparative genomics

• dep: libmems1t64 (>= 1.6.0+4725) [ei alpha, ia64, ppc64, sparc64]

  library to support DNA string matching and comparative genomics

• dep: libmuscle1 (>= 3.7+4565) [sparc64]

  multiple alignment library for protein sequences

• dep: libstdc++6 (>= 13.1) [ei arm64, x32]

  GNU standardi C++ -kirjasto, versio 3

  dep: libstdc++6 (>= 14) [arm64, x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• enh: mauve-aligner

  multiple genome alignment

Imuroi progressivemauve

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	1.2.0+4713+dfsg-5+b2	892.3 kt	6,441.0 kt	[tiedostoluettelo]
amd64	1.2.0+4713+dfsg-5+b3	850.6 kt	5,393.0 kt	[tiedostoluettelo]
arm64	1.2.0+4713+dfsg-5+b4	815.3 kt	5,775.0 kt	[tiedostoluettelo]
armel	1.2.0+4713+dfsg-5+b3	671.7 kt	3,966.0 kt	[tiedostoluettelo]
armhf	1.2.0+4713+dfsg-5+b3	668.8 kt	3,070.0 kt	[tiedostoluettelo]
hppa (epävirallinen siirros)	1.2.0+4713+dfsg-5+b3	939.2 kt	5,325.0 kt	[tiedostoluettelo]
i386	1.2.0+4713+dfsg-5+b3	842.1 kt	5,254.0 kt	[tiedostoluettelo]
ia64 (epävirallinen siirros)	1.2.0+4713+dfsg-5+b2	1,091.3 kt	9,489.0 kt	[tiedostoluettelo]
m68k (epävirallinen siirros)	1.2.0+4713+dfsg-5+b3	811.2 kt	5,262.0 kt	[tiedostoluettelo]
mips64el	1.2.0+4713+dfsg-5+b3	823.7 kt	6,838.0 kt	[tiedostoluettelo]
ppc64 (epävirallinen siirros)	1.2.0+4713+dfsg-5+b2	852.6 kt	7,313.0 kt	[tiedostoluettelo]
ppc64el	1.2.0+4713+dfsg-5+b3	877.5 kt	6,863.0 kt	[tiedostoluettelo]
riscv64	1.2.0+4713+dfsg-5+b3	939.3 kt	4,687.0 kt	[tiedostoluettelo]
s390x	1.2.0+4713+dfsg-5+b3	729.4 kt	5,366.0 kt	[tiedostoluettelo]
sh4 (epävirallinen siirros)	1.2.0+4713+dfsg-5+b3	920.5 kt	5,641.0 kt	[tiedostoluettelo]
sparc64 (epävirallinen siirros)	1.2.0+4713+dfsg-5+b2	813.5 kt	27,865.0 kt	[tiedostoluettelo]
x32 (epävirallinen siirros)	1.2.0+4713+dfsg-5+b3	890.7 kt	5,162.0 kt	[tiedostoluettelo]