Paketti: mauve-aligner (2.4.0+4736-6)

[ Source: mauve-aligner  ]

multiple genome alignment

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.

Muut pakettiin mauve-aligner liittyvät paketit

• dep: java-wrappers

  wrappers for java executables

• dep: libbiojava-java (>= 1:1.9.5+dfsg-1)

  Java API to biological data and applications (default version)

• dep: libbiojava1.9-java

  Java API to biological data and applications (version 1.9)

• dep: libcommons-cli-java

  Command line arguments and options parsing library

• dep: libdbus-java

  simple interprocess messaging system (Java implementation)

• dep: libunixsocket-java

  Unix socket API and bindings for Java

• dep: libzeus-jscl-java

  Zeus Java Swing Components Library

• dep: progressivemauve

  multiple genome alignment algorithms

Imuroi mauve-aligner

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	477.8 kt	544.0 kt	[tiedostoluettelo]