[ Source: openms ]
Paketti: topp (2.4.0-real-1)
Links for topp
Debian-palvelut:
Imuroi lähdekoodipaketti openms:
Ylläpitäjät:
External Resources:
- Kotisivu [www.openms.de]
Samankaltaisia paketteja:
set of programs implementing The OpenMS Proteomic Pipeline
TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis of HPLC/MS data. It consists of a set of numerous small applications that can be chained together to create analysis pipelines tailored for a specific problem. The applications make use of the libopenms library. Some examples of these applications are :
- TOPPView: A viewer for mass spectrometry data. - TOPPAS: An assistant for GUI-driven TOPP workflow design. - DTAExtractor: Extracts spectra of an MS run file to several files in DTA format. - FileConverter: Converts between different MS file formats. - FileFilter: Extracts or manipulates portions of data from peak, feature or consensus feature files. - SpectraMerger: Merges spectra from an LC/MS map, either by precursor or by RT blocks. - BaselineFilter: Removes the baseline from profile spectra using a top-hat filter. - InternalCalibration: Applies an internal calibration. - PTModel: Trains a model for the prediction of proteotypic peptides from a training set. - RTPredict: Predicts retention times for peptides using a model trained by RTModel. - ExecutePipeline: Executes workflows created by TOPPAS.
Muut pakettiin topp liittyvät paketit
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- dep: coinor-libcbc3
- Coin-or branch-and-cut mixed integer programming solver (shared libraries)
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- dep: coinor-libcgl1
- COIN-OR Cut Generation Library
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- dep: coinor-libclp1
- Coin-or linear programming solver (shared libraries)
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- dep: coinor-libcoinutils3v5
- Coin-or collection of utility classes (binaries and libraries)
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- dep: coinor-libosi1v5
- COIN-OR Open Solver Interface
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- dep: libboost-date-time1.67.0
- set of date-time libraries based on generic programming concepts
-
- dep: libboost-iostreams1.67.0
- Boost.Iostreams -kirjasto
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- dep: libboost-math1.67.0
- Boost.Math Library
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- dep: libboost-regex1.67.0 (>= 1.67.0-10)
- regular expression library for C++
-
- dep: libbz2-1.0
- high-quality block-sorting file compressor library - runtime
-
- dep: libc6 (>= 2.4)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- GCC:n apukirjasto
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- dep: libglpk40 (>= 4.59)
- linear programming kit with integer (MIP) support
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libopenms2.4.0 (= 2.4.0-real-1)
- library for LC/MS data management and analysis - runtime
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- dep: libqt5core5a (>= 5.11.0~rc1)
- Qt 5 core module
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- dep: libqt5gui5 (>= 5.8.0)
- Qt 5 GUI module
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- dep: libqt5network5 (>= 5.7.0)
- Qt 5 network module
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- dep: libqt5svg5 (>= 5.6.0~beta)
- Qt 5 SVG module
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- dep: libqt5widgets5 (>= 5.7.0)
- Qt 5 widgets module
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- dep: libsqlite3-0 (>= 3.5.9)
- SQLite 3 (jaettu kirjasto)
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- dep: libstdc++6 (>= 5.2)
- GNU standardi C++ -kirjasto, versio 3
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- dep: libsvm3
- library implementing support vector machines
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- dep: libwildmagic5 (>= 5.13)
- libraries for mathematics, physics, numerical methods - runtime
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- dep: libxerces-c3.2
- validating XML parser library for C++
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- dep: openms-common (= 2.4.0-real-1)
- package for LC/MS data management and analysis - shared data
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- dep: zlib1g (>= 1:1.1.4)
- pakkauskirjaston ajonaikaistiedostot
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- sug: openms-doc
- package for LC/MS data management and analysis - documentation
Imuroi topp
Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
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i386 | 2,809.1 kt | 15,051.0 kt | [tiedostoluettelo] |