Paketti: r-bioc-bitseq (1.34.0+dfsg-1)

[ Source: r-bioc-bitseq  ]

transcript expression inference and analysis for RNA-seq data

The BitSeq package is targeted for transcript expression analysis and differential expression analysis of RNA-seq data in two stage process. In the first stage it uses Bayesian inference methodology to infer expression of individual transcripts from individual RNA-seq experiments. The second stage of BitSeq embraces the differential expression analysis of transcript expression. Providing expression estimates from replicates of multiple conditions, Log-Normal model of the estimates is used for inferring the condition mean transcript expression and ranking the transcripts based on the likelihood of differential expression.

Muut pakettiin r-bioc-bitseq liittyvät paketit

• dep: libc6 (>= 2.29)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libcurl4 (>= 7.18.0)

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libgcc-s1 (>= 3.0) [amd64, s390x]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [arm64, i386, mips64el, mipsel]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU standardi C++ -kirjasto, versio 3

• dep: r-api-4.0

  näennäispaketti, jonka toteuttaa r-base-core

• dep: r-api-bioc-3.12

  näennäispaketti, jonka toteuttaa r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.3-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-iranges

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rhtslib (>= 1.15.5)

  HTSlib high-throughput sequencing library as GNU R package

• dep: r-bioc-rsamtools (>= 1.99.3)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-deseq

  GNU R differential gene expression analysis

• sug: r-bioc-edger

  Empirical analysis of digital gene expression data in R

Imuroi r-bioc-bitseq

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	1,104.1 kt	5,998.0 kt	[tiedostoluettelo]
arm64	1,062.4 kt	5,890.0 kt	[tiedostoluettelo]
armel	1,041.0 kt	5,838.0 kt	[tiedostoluettelo]
armhf	1,047.6 kt	5,594.0 kt	[tiedostoluettelo]
i386	1,135.7 kt	6,077.0 kt	[tiedostoluettelo]
mips64el	1,066.9 kt	6,107.0 kt	[tiedostoluettelo]
mipsel	1,070.9 kt	6,055.0 kt	[tiedostoluettelo]
ppc64el	1,132.8 kt	6,254.0 kt	[tiedostoluettelo]
s390x	1,065.5 kt	6,029.0 kt	[tiedostoluettelo]