Paketti: e-mem (1.0.1-4)

[ Source: e-mem  ]

Efficient computation of Maximal Exact Matches for very large genomes

E-MEM enables efficient computation of Maximal Exact Matches (MEMs) that does not use full text indexes. The algorithm uses much less space and is highly amenable to parallelization. It can compute all MEMs of minimum length 100 between the whole human and mouse genomes on a 12 core machine in 10 min and 2 GB of memory; the required memory can be as low as 600 MB. It can run efficiently genomes of any size. Extensive testing and comparison with currently best algorithms is provided.

Mummer has many different scripts where one of the key program is MEM computation. In all the scripts, the MEM computation program can be replaced with e-mem with ease for better performance.

Muut pakettiin e-mem liittyvät paketit

• dep: libc6 (>= 2.14) [amd64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [ei amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [ei armel, armhf, i386, mipsel]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU standardi C++ -kirjasto, versio 3

• enh: mummer

  Efficient sequence alignment of full genomes

Imuroi e-mem

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	34.1 kt	106.0 kt	[tiedostoluettelo]
arm64	30.9 kt	94.0 kt	[tiedostoluettelo]
armel	33.9 kt	101.0 kt	[tiedostoluettelo]
armhf	33.5 kt	81.0 kt	[tiedostoluettelo]
i386	40.2 kt	117.0 kt	[tiedostoluettelo]
mips64el	33.6 kt	117.0 kt	[tiedostoluettelo]
mipsel	40.9 kt	120.0 kt	[tiedostoluettelo]
ppc64el	34.4 kt	162.0 kt	[tiedostoluettelo]
s390x	31.5 kt	102.0 kt	[tiedostoluettelo]