Paketti: fastahack (1.0.0+dfsg-10)
Links for fastahack
Debian-palvelut:
Imuroi lähdekoodipaketti libfastahack:
- [libfastahack_1.0.0+dfsg-10.dsc]
- [libfastahack_1.0.0+dfsg.orig.tar.xz]
- [libfastahack_1.0.0+dfsg-10.debian.tar.xz]
Ylläpitäjät:
- Debian Med Packaging Team (Laadunvalvontasivu, Mail Archive)
- Andreas Tille (Laadunvalvontasivu)
- Étienne Mollier (Laadunvalvontasivu)
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
utility for indexing and sequence extraction from FASTA files
fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.
Features:
* FASTA index (.fai) generation for FASTA files * Sequence extraction * Subsequence extraction * Sequence statistics (currently only entropy is provided)
Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.
Muut pakettiin fastahack liittyvät paketit
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- dep: libc6 (>= 2.4)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libdisorder0 (>= 0.0.2)
- library for entropy measurement of byte streams
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- dep: libfastahack0 (>= 1.0.0+dfsg)
- library for indexing and sequence extraction from FASTA files (lib)
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- dep: libgcc-s1 (>= 3.0)
- GCC:n apukirjasto
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- dep: libstdc++6 (>= 5.2)
- GNU standardi C++ -kirjasto, versio 3
Imuroi fastahack
Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
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i386 | 12.7 kt | 43.0 kt | [tiedostoluettelo] |