Package: miniasm (0.3+dfsg-4 and others)

[ Source: miniasm  ]

ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, Role: role::program, science::calculation, Purpose: Calculating, use::comparing, works-with::biological-sequence

Other Packages Related to miniasm

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: minimap

  tool for approximate mapping of long biosequences such as DNA reads

Download miniasm

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	0.3+dfsg-4	29.2 kB	71.0 kB	[list of files]
arm64	0.3+dfsg-4+b1	27.2 kB	84.0 kB	[list of files]
armel	0.3+dfsg-4	27.7 kB	82.0 kB	[list of files]
armhf	0.3+dfsg-4	26.3 kB	82.0 kB	[list of files]
i386	0.3+dfsg-4	31.2 kB	78.0 kB	[list of files]
mips64el	0.3+dfsg-4	29.7 kB	86.0 kB	[list of files]
ppc64el	0.3+dfsg-4	31.9 kB	83.0 kB	[list of files]
riscv64	0.3+dfsg-4+b1	29.9 kB	60.0 kB	[list of files]
s390x	0.3+dfsg-4	28.4 kB	70.0 kB	[list of files]