Package: libssw0 (1.1-15 and others)

[ Source: libssw  ]

fast SIMD parallelized implementation of the Smith-Waterman algorithm

SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. The library can do protein and genome alignment directly. Current version of this implementation is ~50 times faster than an ordinary Smith-Waterman. It can return the Smith-Waterman score, alignment location and traceback path (cigar) of the optimal alignment accurately; and return the sub-optimal alignment score and location heuristically.

Tags: Role: Shared Library

Other Packages Related to libssw0

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el, riscv64]

• dep: libgcc-s1 (>= 3.3.1) [not armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: zlib1g

  compression library - runtime

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Architecture	Version	Package Size	Installed Size	Files
amd64	1.1-15+b1	21.2 kB	64.0 kB	[list of files]
arm64	1.1-15+b1	19.5 kB	84.0 kB	[list of files]
armel	1.1-15+b1	20.8 kB	60.0 kB	[list of files]
armhf	1.1-15+b1	21.1 kB	52.0 kB	[list of files]
i386	1.1-15+b1	26.1 kB	84.0 kB	[list of files]
mips64el	1.1-15+b1	25.2 kB	86.0 kB	[list of files]
ppc64el	1.1-15+b1	22.2 kB	84.0 kB	[list of files]
riscv64	1.1-15+b1	25.3 kB	60.0 kB	[list of files]
s390x	1.1-15+b1	25.5 kB	68.0 kB	[list of files]