Package: libfastahack-dev (1.0.0+dfsg-11 and others)

[ Source: libfastahack  ]

library for indexing and sequence extraction from FASTA files (devel)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This is the development package containing the statically linked library and the header files.

Tags: Software Development: Libraries, Role: Development Library

Other Packages Related to libfastahack-dev

• dep: libfastahack0 (= 1.0.0+dfsg-11+b2)

  library for indexing and sequence extraction from FASTA files (lib)

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Architecture	Version	Package Size	Installed Size	Files
amd64	1.0.0+dfsg-11+b2	27.2 kB	117.0 kB	[list of files]
arm64	1.0.0+dfsg-11+b2	25.5 kB	114.0 kB	[list of files]
armel	1.0.0+dfsg-11+b2	26.6 kB	105.0 kB	[list of files]
armhf	1.0.0+dfsg-11+b2	26.5 kB	92.0 kB	[list of files]
i386	1.0.0+dfsg-11+b2	28.8 kB	102.0 kB	[list of files]
mips64el	1.0.0+dfsg-11+b2	28.7 kB	136.0 kB	[list of files]
ppc64el	1.0.0+dfsg-11+b2	27.3 kB	119.0 kB	[list of files]
riscv64	1.0.0+dfsg-11+b2	78.2 kB	697.0 kB	[list of files]
s390x	1.0.0+dfsg-11+b2	26.9 kB	117.0 kB	[list of files]