Paket: libfastahack-dev (1.0.0+dfsg-11 und andere)

[ Quellcode: libfastahack  ]

library for indexing and sequence extraction from FASTA files (devel)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This is the development package containing the statically linked library and the header files.

Markierungen: Software-Entwicklung: Bibliotheken, Rolle: Entwicklungs-Bibliothek

Andere Pakete mit Bezug zu libfastahack-dev

• dep: libfastahack0 (= 1.0.0+dfsg-11+b2)

  library for indexing and sequence extraction from FASTA files (lib)

libfastahack-dev herunterladen

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Architektur	Version	Paketgröße	Größe (installiert)	Dateien
amd64	1.0.0+dfsg-11+b2	27,2 kB	117,0 kB	[Liste der Dateien]
arm64	1.0.0+dfsg-11+b2	25,5 kB	114,0 kB	[Liste der Dateien]
armel	1.0.0+dfsg-11+b2	26,6 kB	105,0 kB	[Liste der Dateien]
armhf	1.0.0+dfsg-11+b2	26,5 kB	92,0 kB	[Liste der Dateien]
i386	1.0.0+dfsg-11+b2	28,8 kB	102,0 kB	[Liste der Dateien]
mips64el	1.0.0+dfsg-11+b2	28,7 kB	136,0 kB	[Liste der Dateien]
ppc64el	1.0.0+dfsg-11+b2	27,3 kB	119,0 kB	[Liste der Dateien]
riscv64	1.0.0+dfsg-11+b2	78,2 kB	697,0 kB	[Liste der Dateien]
s390x	1.0.0+dfsg-11+b2	26,9 kB	117,0 kB	[Liste der Dateien]