Package: tombo (1.5.1-7 and others)

[ Source: tombo  ]

identification of modified nucleotides from raw nanopore sequencing data

Tombo is a suite of tools primarily for the identification of modified nucleotides from nanopore sequencing data. Tombo also provides tools for the analysis and visualization of raw nanopore signal.

Other Packages Related to tombo

• dep: cython3 [ia64]

  C-Extensions for Python 3

• dep: libc6 (>= 2.27) [riscv64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.29) [not alpha, ia64, riscv64, sh4]

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.36) [ia64]

• dep: libgcc-s1 (>= 3.3.4) [sh4]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12) [ia64]

  dep: python3 (<< 3.13) [x32]

  dep: python3 (<< 3.14) [not ia64, x32]

  dep: python3 (>= 3.11~) [ia64]

  dep: python3 (>= 3.12~) [not ia64]

• dep: python3-h5py

  general-purpose Python interface to hdf5

• dep: python3-mappy

  Python3 interface minimap2

• dep: python3-numpy [ia64]

  Fast array facility to the Python language (Python 3)

  dep: python3-numpy (>= 1:1.25.0) [not ia64]

• dep: python3-numpy-abi9 [not ia64]

  virtual package provided by python3-numpy

• dep: python3-packaging [not ia64]

  core utilities for python3 packages

• dep: python3-pkg-resources [ia64]

  Package Discovery and Resource Access using pkg_resources

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-tqdm

  fast, extensible progress bar for Python 3 and CLI tool

• rec: python3-pyfaidx

  efficient random access to fasta subsequences for Python 3

• rec: python3-rpy2

  Python3 interface to the GNU R language and environment (version 2)

Download tombo

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.5.1-7	482.8 kB	1,943.0 kB	[list of files]
amd64	1.5.1-7	495.9 kB	1,831.0 kB	[list of files]
arm64	1.5.1-7	472.2 kB	1,809.0 kB	[list of files]
armel	1.5.1-7	477.7 kB	1,739.0 kB	[list of files]
armhf	1.5.1-7	485.1 kB	1,595.0 kB	[list of files]
hppa (unofficial port)	1.5.1-7	496.0 kB	1,812.0 kB	[list of files]
i386	1.5.1-7	499.0 kB	1,867.0 kB	[list of files]
ia64 (unofficial port)	1.5.1-4	432.8 kB	1,618.0 kB	[list of files]
m68k (unofficial port)	1.5.1-7	472.6 kB	1,723.0 kB	[list of files]
mips64el	1.5.1-7	472.2 kB	1,955.0 kB	[list of files]
ppc64 (unofficial port)	1.5.1-7	484.3 kB	2,067.0 kB	[list of files]
ppc64el	1.5.1-7	487.4 kB	2,065.0 kB	[list of files]
riscv64	1.5.1-7	500.3 kB	1,657.0 kB	[list of files]
s390x	1.5.1-7	490.0 kB	1,809.0 kB	[list of files]
sh4 (unofficial port)	1.5.1-7	542.4 kB	1,805.0 kB	[list of files]
sparc64 (unofficial port)	1.5.1-7	461.5 kB	5,279.0 kB	[list of files]
x32 (unofficial port)	1.5.1-7	443.8 kB	1,473.0 kB	[list of files]