Package: sga (0.10.15-4) [debports]

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de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Other Packages Related to sga

• dep: libbamtools2.5.1

  Package not available

• dep: libc6 (>= 2.27)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc1 (>= 1:3.4)

  Package not available

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: python

  Package not available

• dep: python-pysam

  Package not available

• dep: python-ruffus

  Package not available

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: abyss (>= 2.0.2-1)

  de novo, parallel, sequence assembler for short reads

Download sga

Download for all available architectures

Architecture	Package Size	Installed Size	Files
sh4 (unofficial port)	1,052.2 kB	2,782.0 kB	[list of files]