Package: khmer (3.0.0~a3+dfsg-8 and others)

[ Source: khmer  ]

in-memory DNA sequence kmer counting, filtering & graph traversal

khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name.

Tags: Biology: Fasta/Pearson, Nucleic Acids, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c++, implemented-in::python, User Interface: Command Line, Role: role::program, use::analysing, Purpose: Comparing, Filtering

Other Packages Related to khmer

• dep: cython3 (>= 0.26.1) [ia64]

  C-Extensions for Python 3

• dep: khmer-common

  common files for the khmer project tools

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.38) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.4) [sparc64]

• dep: libc6.1 (>= 2.31) [ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libgcc-s1 (>= 3.4) [amd64]

  GCC support library

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc1 (>= 1:3.4) [sparc64]

  Package not available

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 13.1) [amd64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [not amd64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: python3 [not sparc64]

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.10) [ia64]

  dep: python3 (<< 3.13) [amd64]

  dep: python3 (<< 3.6) [sparc64]

  dep: python3 (>= 3.12~) [amd64]

  dep: python3 (>= 3.4~) [sparc64]

  dep: python3 (>= 3.9~) [ia64]

• dep: python3-bz2file [not amd64]

  Package not available

• dep: python3-screed [amd64]

  short nucleotide read sequence utils in Python 3

  dep: python3-screed (<< 1.0) [sparc64]

  dep: python3-screed (>= 1.0) [ia64]

• dep: zlib1g (>= 1:1.2.3.4)

  compression library - runtime

Download khmer

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	3.0.0~a3+dfsg-8+b1	7,074.6 kB	41,004.0 kB	[list of files]
ia64 (unofficial port)	2.1.2+dfsg-9	6,427.6 kB	33,935.0 kB	[list of files]
sparc64 (unofficial port)	2.0+dfsg-5	5,855.3 kB	23,661.0 kB	[list of files]