Package: covtobed (1.3.5+dfsg-2) [debports]

[ Source:  ]

convert the coverage track from a BAM file into a BED file

Reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.

Other Packages Related to covtobed

• dep: bamtools

  toolkit for manipulating BAM (genome alignment) files

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6.1 (>= 2.37)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8

  library to determine the call-chain of a program - runtime

• dep: zlib1g

  compression library - runtime

Download covtobed

Download for all available architectures

Architecture	Package Size	Installed Size	Files
ia64 (unofficial port)	57.1 kB	240.0 kB	[list of files]