Package: hts-nim-tools (0.2.1-1 and others)

[ Source: hts-nim-tools  ]

tools biological sequences: bam-filter, count-reads, vcf-check

This package provides several tools that (at least at the time of their creation) provide functionalities beyond the routine provided by samtools and other reverse dependencies of the htslib.

These new tools are

 • bam-filter : filter BAM/CRAM/SAM files with a simple expression language
 • count-reads: count BAM/CRAM reads in regions given in a BED file
 • vcf-check  : check regions of a VCF against a background for missing chunks

and yes, as the name suggests, these tools are all implemented in nim, using the nim-hts (upstream: hts-nim) wrapper for the htslib.

Other Packages Related to hts-nim-tools

• dep: libc6 (>= 2.29) [not riscv64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.34) [riscv64]

• dep: nim-hts-dev

  wrapper for hts C library

Download hts-nim-tools

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	0.2.1-1	198.0 kB	864.0 kB	[list of files]
arm64	0.2.1-1	164.6 kB	844.0 kB	[list of files]
armel	0.2.1-1	182.9 kB	832.0 kB	[list of files]
armhf	0.2.1-1	182.9 kB	604.0 kB	[list of files]
i386	0.2.1-1	186.0 kB	843.0 kB	[list of files]
mips64el	0.2.1-1	137.8 kB	951.0 kB	[list of files]
ppc64 (unofficial port)	0.2.1-1	155.9 kB	981.0 kB	[list of files]
ppc64el	0.2.1-1	158.6 kB	916.0 kB	[list of files]
riscv64	0.2.1-1+b1	158.8 kB	573.0 kB	[list of files]
sparc64 (unofficial port)	0.2.1-1	135.8 kB	944.0 kB	[list of files]