Package: unicycler (0.4.7+dfsg-2)

[ Source: unicycler  ]

hybrid assembly pipeline for bacterial genomes

Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.

Other Packages Related to unicycler

• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: default-jre

  Standard Java or Java compatible Runtime

• dep: libc6 (>= 2.14)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc1 (>= 1:3.0)

  GCC support library

• dep: libstdc++6 (>= 6)

  GNU Standard C++ Library v3

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: pilon

  automated genome assembly improvement and variant detection tool

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (>= 3~)

• dep: python3-setuptools

  Python3 Distutils Enhancements

• dep: racon

  consensus module for raw de novo DNA assembly of long uncorrected reads

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: spades

  genome assembler for single-cell and isolates data sets

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: unicycler-data

  hybrid assembly pipeline for bacterial genomes (data package)

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Architecture	Package Size	Installed Size	Files
amd64	852.3 kB	3,429.0 kB	[list of files]