Package: r-bioc-rtracklayer (1.42.1-2)

[ Source: r-bioc-rtracklayer  ]

GNU R interface to genome browsers and their annotation tracks

Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

Other Packages Related to r-bioc-rtracklayer

• dep: libc6 (>= 2.28)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: r-api-3.5

  virtual package provided by r-base-core

• dep: r-api-bioc-3.8

  virtual package provided by r-bioc-biocgenerics

• dep: r-base-core (>= 3.5.2-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biocgenerics (>= 0.25.1)

  generic functions for Bioconductor

• dep: r-bioc-biostrings (>= 2.47.6)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.15.2)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.15.6)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicranges (>= 1.31.8)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.13.13)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 1.31.2)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.19.22)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.19.7)

  BioConductor representation and manpulation of external sequences

• dep: r-bioc-zlibbioc

  (Virtual) zlibbioc Bioconductor package

• dep: r-cran-rcurl (>= 1.4-2)

  GNU R General network (HTTP/FTP/...) client interface

• dep: r-cran-xml (>= 1.98-0)

  GNU R package for XML parsing and generation

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• sug: r-bioc-bsgenome (>= 1.33.4)

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-genefilter

  methods for filtering genes from microarray experiments

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-limma

  linear models for microarray data

• sug: r-cran-runit

  GNU R package providing unit testing framework

Download r-bioc-rtracklayer

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	2,382.5 kB	3,818.0 kB	[list of files]
arm64	2,374.3 kB	3,818.0 kB	[list of files]
armhf	2,358.5 kB	3,659.0 kB	[list of files]
i386	2,401.8 kB	3,857.0 kB	[list of files]